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SRX3339020: GSM2834595: SW 2-week-cold rep2; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 19.3M spots, 966M bases, 435Mb downloads

Submitted by: NCBI (GEO)
Study: Potential role of the CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
PRJNA416120 • SRP122518 • All experiments • All runs
show Abstracthide Abstract
The two Arabidopsis ecotypes that are adapted to Italy and Sweden, respectively, showed different degree of freezing tolerance. By comparing the low temperature transcriptomes of the IT and SW ecotypes with the CBF pathway being knocked out, we showed the CBF pathway plays a significant role in natural variation of freezing tolerance. Overall design: Examination of mRNA levels in cbf CRISPR mutants in background of the Arabidospsis Italian and Swedish ecotype plants grown at warm, cold for 24h, and cold for 2 weeks.
Sample: SW 2-week-cold rep2
SAMN07842311 • SRS2641096 • All experiments • All runs
Organism: Arabidopsis thaliana
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using the RNeasy plant mini kit (Qiagen) RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2834595
Links:
Runs: 1 run, 19.3M spots, 966M bases, 435Mb
Run# of Spots# of BasesSizePublished
SRR623050619,319,281966M435Mb2018-07-31

ID:
4668149

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